J4_8URM_016

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

(4SU)UAG*CAC*GGG(7MG)UCG*CA

Length

16 nucleotides

Bulged bases

8URM|1|6|U|8, 8URM|1|6|U|47, 8URM|1|6|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URM|1|6|4SU|7
8URM|1|6|U|8
8URM|1|6|A|9
8URM|1|6|G|10
*
8URM|1|6|C|25
8URM|1|6|A|26
8URM|1|6|C|27
*
8URM|1|6|G|43
8URM|1|6|G|44
8URM|1|6|G|45
8URM|1|6|7MG|46
8URM|1|6|U|47
8URM|1|6|C|48
8URM|1|6|G|49
*
8URM|1|6|C|65
8URM|1|6|A|66

Current chains

Chain 6

tRNA Val

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 2

Small subunit ribosomal RNA; SSU rRNA