J4_8UTI_013
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GUGG*CGC*GAUGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 8UTI|1|n|U|8, 8UTI|1|n|U|47, 8UTI|1|n|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UTI_013 not in the Motif Atlas
- Homologous match to J4_7K98_001
- Geometric discrepancy: 0.206
- The information below is about J4_7K98_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8UTI|1|n|G|7
8UTI|1|n|U|8
8UTI|1|n|G|9
8UTI|1|n|G|10
*
8UTI|1|n|C|25
8UTI|1|n|G|26
8UTI|1|n|C|27
*
8UTI|1|n|G|43
8UTI|1|n|A|44
8UTI|1|n|U|45
8UTI|1|n|G|46
8UTI|1|n|U|47
8UTI|1|n|C|48
8UTI|1|n|C|49
*
8UTI|1|n|G|65
8UTI|1|n|C|66
Current chains
- Chain n
- P site initiator tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- 40S ribosomal protein S25-A
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain LL
- 60S ribosomal protein L10
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