J4_8UU4_008

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8UU4|1|A|A|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU4_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1035

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8UU4|1|A|C|1866
8UU4|1|A|U|1867
8UU4|1|A|G|1868
*
8UU4|1|A|C|1938
8UU4|1|A|G|1939
*
8UU4|1|A|C|1957
8UU4|1|A|C|1958
8UU4|1|A|U|1959
8UU4|1|A|A|1960
8UU4|1|A|A|1961
8UU4|1|A|G|1962
8UU4|1|A|G|1963
8UU4|1|A|U|1964
8UU4|1|A|A|1965
8UU4|1|A|G|1966
*
8UU4|1|A|C|2000
8UU4|1|A|G|2001
8UU4|1|A|A|2002
8UU4|1|A|A|2003
8UU4|1|A|A|2004
8UU4|1|A|G|2005

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA