J4_8UU6_004
3D structure
- PDB id
- 8UU6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 8UU6|1|A|G|1316, 8UU6|1|A|A|1317, 8UU6|1|A|A|1319, 8UU6|1|A|G|1696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UU6_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.103
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UU6|1|A|C|1315
8UU6|1|A|G|1316
8UU6|1|A|A|1317
8UU6|1|A|A|1318
8UU6|1|A|A|1319
8UU6|1|A|G|1320
*
8UU6|1|A|C|1338
8UU6|1|A|C|1339
*
8UU6|1|A|G|1694
8UU6|1|A|A|1695
8UU6|1|A|G|1696
8UU6|1|A|C|1697
*
8UU6|1|A|G|2042
8UU6|1|A|G|2043
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain P
- Large ribosomal subunit protein bL17
- Chain U
- Large ribosomal subunit protein uL22
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