J4_8UU6_015

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

8UU6|1|x|4SU|8, 8UU6|1|x|U|47, 8UU6|1|x|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU6_015 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.3658

The information below is about J4_6UFG_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8UU6|1|x|A|7
8UU6|1|x|4SU|8
8UU6|1|x|A|9
8UU6|1|x|G|10
*
8UU6|1|x|C|25
8UU6|1|x|A|26
8UU6|1|x|G|27
*
8UU6|1|x|C|43
8UU6|1|x|G|44
8UU6|1|x|U|45
8UU6|1|x|7MG|46
8UU6|1|x|U|47
8UU6|1|x|C|48
8UU6|1|x|C|49
*
8UU6|1|x|G|65
8UU6|1|x|U|66

Current chains

Chain x

p/E Hybrid State Phenylalanine tRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain a

Small subunit ribosomal RNA; SSU rRNA