J4_8UU9_008
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 8UU9|1|A|A|2004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UU9_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.15
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UU9|1|A|C|1866
8UU9|1|A|U|1867
8UU9|1|A|G|1868
*
8UU9|1|A|C|1938
8UU9|1|A|G|1939
*
8UU9|1|A|C|1957
8UU9|1|A|C|1958
8UU9|1|A|U|1959
8UU9|1|A|A|1960
8UU9|1|A|A|1961
8UU9|1|A|G|1962
8UU9|1|A|G|1963
8UU9|1|A|U|1964
8UU9|1|A|A|1965
8UU9|1|A|G|1966
*
8UU9|1|A|C|2000
8UU9|1|A|G|2001
8UU9|1|A|A|2002
8UU9|1|A|A|2003
8UU9|1|A|A|2004
8UU9|1|A|G|2005
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- GTPase HflX
Coloring options: