J4_8UU9_011

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAACAC*GGU*AUAG*CC

Length

18 nucleotides

Bulged bases

8UU9|1|a|C|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU9|1|a|G|113
8UU9|1|a|A|114
8UU9|1|a|G|115
8UU9|1|a|U|116
8UU9|1|a|A|117
8UU9|1|a|A|118
8UU9|1|a|C|119
8UU9|1|a|A|120
8UU9|1|a|C|121
*
8UU9|1|a|G|246
8UU9|1|a|G|247
8UU9|1|a|U|248
*
8UU9|1|a|A|294
8UU9|1|a|U|295
8UU9|1|a|A|296
8UU9|1|a|G|297
*
8UU9|1|a|C|319
8UU9|1|a|C|320

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17