J4_8UU9_012

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AAUGAUA*UUGAAAG*CG

Length

18 nucleotides

Bulged bases

8UU9|1|a|U|182, 8UU9|1|a|A|211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU9|1|a|U|142
8UU9|1|a|U|143
*
8UU9|1|a|A|177
8UU9|1|a|A|178
8UU9|1|a|U|179
8UU9|1|a|G|180
8UU9|1|a|A|181
8UU9|1|a|U|182
8UU9|1|a|A|183
*
8UU9|1|a|U|206
8UU9|1|a|U|207
8UU9|1|a|G|208
8UU9|1|a|A|209
8UU9|1|a|A|210
8UU9|1|a|A|211
8UU9|1|a|G|212
*
8UU9|1|a|C|227
8UU9|1|a|G|228

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20