J4_8UVR_004

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8UVR|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UVR_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0481

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8UVR|1|1A|G|1310
8UVR|1|1A|G|1311
8UVR|1|1A|U|1312
8UVR|1|1A|U|1313
8UVR|1|1A|C|1314
*
8UVR|1|1A|G|1338
8UVR|1|1A|G|1339
8UVR|1|1A|U|1340
8UVR|1|1A|U|1341
8UVR|1|1A|A|1342
8UVR|1|1A|G|1343
*
8UVR|1|1A|C|1404
8UVR|1|1A|U|1405
*
8UVR|1|1A|A|1597
8UVR|1|1A|C|1598
8UVR|1|1A|C|1599
8UVR|1|1A|C|1600
8UVR|1|1A|G|1601
8UVR|1|1A|U|1602
8UVR|1|1A|A|1603
8UVR|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23