J4_8UVR_023

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UVR_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0401

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8UVR|1|2A|G|1772
8UVR|1|2A|A|1773
8UVR|1|2A|C|1774
8UVR|1|2A|U|1775
8UVR|1|2A|G|1776
*
8UVR|1|2A|C|1788
8UVR|1|2A|A|1789
8UVR|1|2A|C|1790
8UVR|1|2A|A|1791
8UVR|1|2A|G|1792
*
8UVR|1|2A|C|1827
8UVR|1|2A|G|1828
8UVR|1|2A|A|1829
8UVR|1|2A|C|1830
*
8UVR|1|2A|G|1975
8UVR|1|2A|U|1976
8UVR|1|2A|A|1977
8UVR|1|2A|A|1978
8UVR|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA