J4_8UZG_013

3D structure

PDB id

8UZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8UZG|1|2|C|576, 8UZG|1|2|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UZG_013 not in the Motif Atlas

Homologous match to J4_8B0X_003

Geometric discrepancy: 0.1111

The information below is about J4_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.3

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8UZG|1|2|G|575
8UZG|1|2|C|576
8UZG|1|2|G|577
*
8UZG|1|2|C|764
8UZG|1|2|G|765
8UZG|1|2|A|766
8UZG|1|2|A|767
8UZG|1|2|A|768
8UZG|1|2|G|769
*
8UZG|1|2|C|810
8UZG|1|2|C|811
8UZG|1|2|G|812
8UZG|1|2|U|813
8UZG|1|2|A|814
8UZG|1|2|A|815
8UZG|1|2|A|816
8UZG|1|2|C|817
8UZG|1|2|G|818
8UZG|1|2|A|819
8UZG|1|2|U|820
8UZG|1|2|G|821
*
8UZG|1|2|C|879
8UZG|1|2|C|880

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain t

30S ribosomal protein S15

Chain v

30S ribosomal protein S17