J4_8V84_003
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAG*CGUAAUGAAAGUGAACGUAG*CGAC*GAGUAAGAG
- Length
- 37 nucleotides
- Bulged bases
- 8V84|1|1|A|706, 8V84|1|1|A|715, 8V84|1|1|A|716, 8V84|1|1|U|719, 8V84|1|1|A|780, 8V84|1|1|A|783, 8V84|1|1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V84|1|1|C|675
8V84|1|1|G|676
8V84|1|1|A|677
8V84|1|1|G|678
*
8V84|1|1|C|702
8V84|1|1|G|703
8V84|1|1|U|704
8V84|1|1|A|705
8V84|1|1|A|706
8V84|1|1|U|707
8V84|1|1|G|708
8V84|1|1|A|709
8V84|1|1|A|710
8V84|1|1|A|711
8V84|1|1|G|712
8V84|1|1|U|713
8V84|1|1|G|714
8V84|1|1|A|715
8V84|1|1|A|716
8V84|1|1|C|717
8V84|1|1|G|718
8V84|1|1|U|719
8V84|1|1|A|720
8V84|1|1|G|721
*
8V84|1|1|C|749
8V84|1|1|G|750
8V84|1|1|A|751
8V84|1|1|C|752
*
8V84|1|1|G|779
8V84|1|1|A|780
8V84|1|1|G|781
8V84|1|1|U|782
8V84|1|1|A|783
8V84|1|1|A|784
8V84|1|1|G|785
8V84|1|1|A|786
8V84|1|1|G|787
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain A
- Ribosome biogenesis protein BRX1
- Chain C
- 60S ribosomal protein L4-A
- Chain J
- rRNA-processing protein EBP2
- Chain Q
- 60S ribosomal protein L18-A
Coloring options: