J4_8V9J_002

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8V9J_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1249

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8V9J|1|A|G|378
8V9J|1|A|G|379
8V9J|1|A|A|380
8V9J|1|A|A|381
8V9J|1|A|A|382
*
8V9J|1|A|U|398
8V9J|1|A|G|399
8V9J|1|A|C|400
8V9J|1|A|C|401
*
8V9J|1|A|G|405
8V9J|1|A|A|406
8V9J|1|A|C|407
*
8V9J|1|A|G|419
8V9J|1|A|G|420
8V9J|1|A|U|421
8V9J|1|A|A|422
8V9J|1|A|C|423

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain W

50S ribosomal protein L24