J4_8V9J_011

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9J|1|a|G|111
8V9J|1|a|A|112
8V9J|1|a|G|113
8V9J|1|a|U|114
8V9J|1|a|A|115
8V9J|1|a|A|116
8V9J|1|a|C|117
8V9J|1|a|A|118
8V9J|1|a|C|119
*
8V9J|1|a|G|238
8V9J|1|a|G|239
8V9J|1|a|C|240
*
8V9J|1|a|G|286
8V9J|1|a|U|287
8V9J|1|a|A|288
8V9J|1|a|G|289
*
8V9J|1|a|C|311
8V9J|1|a|C|312

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17