J4_8VIO_001
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8VIO|1|5|U|8, 8VIO|1|5|U|48, 8VIO|1|5|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VIO_001 not in the Motif Atlas
- Homologous match to J4_6UFM_001
- Geometric discrepancy: 0.2041
- The information below is about J4_6UFM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8VIO|1|5|G|7
8VIO|1|5|U|8
8VIO|1|5|G|9
8VIO|1|5|G|10
*
8VIO|1|5|C|26
8VIO|1|5|G|27
8VIO|1|5|U|28
*
8VIO|1|5|A|44
8VIO|1|5|A|45
8VIO|1|5|G|46
8VIO|1|5|G|47
8VIO|1|5|U|48
8VIO|1|5|C|49
8VIO|1|5|G|50
*
8VIO|1|5|C|66
8VIO|1|5|C|67
Current chains
- Chain 5
- E-tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S Ribosomal Protein L33
- Chain t
- 30S ribosomal protein S13
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