J4_8VIO_003

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VIO_003 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1278

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8VIO|1|A|G|378
8VIO|1|A|G|379
8VIO|1|A|A|380
8VIO|1|A|A|381
8VIO|1|A|A|382
*
8VIO|1|A|U|398
8VIO|1|A|G|399
8VIO|1|A|C|400
8VIO|1|A|C|401
*
8VIO|1|A|G|405
8VIO|1|A|A|406
8VIO|1|A|C|407
*
8VIO|1|A|G|419
8VIO|1|A|G|420
8VIO|1|A|U|421
8VIO|1|A|A|422
8VIO|1|A|C|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain V

50S ribosomal protein L24