J4_8VIO_012

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8VIO|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|a|G|111
8VIO|1|a|A|112
8VIO|1|a|G|113
8VIO|1|a|U|114
8VIO|1|a|A|115
8VIO|1|a|A|116
8VIO|1|a|C|117
8VIO|1|a|A|118
8VIO|1|a|C|119
*
8VIO|1|a|G|238
8VIO|1|a|G|239
8VIO|1|a|C|240
*
8VIO|1|a|G|286
8VIO|1|a|U|287
8VIO|1|a|A|288
8VIO|1|a|G|289
*
8VIO|1|a|C|311
8VIO|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S16

Chain x

30S ribosomal protein S17