J4_8VIO_013

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UU*AAUACAC*GGAAAG*CG

Length

17 nucleotides

Bulged bases

8VIO|1|a|A|180, 8VIO|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|a|U|140
8VIO|1|a|U|141
*
8VIO|1|a|A|175
8VIO|1|a|A|176
8VIO|1|a|U|177
8VIO|1|a|A|178
8VIO|1|a|C|179
8VIO|1|a|A|180
8VIO|1|a|C|181
*
8VIO|1|a|G|207
8VIO|1|a|G|208
8VIO|1|a|A|209
8VIO|1|a|A|210
8VIO|1|a|A|211
8VIO|1|a|G|212
*
8VIO|1|a|C|219
8VIO|1|a|G|220

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain x

30S ribosomal protein S17

Chain z

30S ribosomal protein S20