J4_8VIO_014
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8VIO|1|a|A|556, 8VIO|1|a|U|793, 8VIO|1|a|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VIO_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0725
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VIO|1|a|G|555
8VIO|1|a|A|556
8VIO|1|a|G|557
*
8VIO|1|a|C|744
8VIO|1|a|G|745
8VIO|1|a|A|746
8VIO|1|a|A|747
8VIO|1|a|A|748
8VIO|1|a|G|749
*
8VIO|1|a|C|790
8VIO|1|a|C|791
8VIO|1|a|G|792
8VIO|1|a|U|793
8VIO|1|a|A|794
8VIO|1|a|A|795
8VIO|1|a|A|796
8VIO|1|a|C|797
8VIO|1|a|G|798
8VIO|1|a|G|799
8VIO|1|a|U|800
8VIO|1|a|G|801
*
8VIO|1|a|C|861
8VIO|1|a|C|862
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Conserved domain protein
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 30S Ribosomal Protein S8
- Chain s
- 30S ribosomal protein S12
- Chain v
- 30S Ribosomal Protein S15
- Chain x
- 30S ribosomal protein S17
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