J4_8VK0_008

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8VK0|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VK0_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1397

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8VK0|1|A|C|2050
8VK0|1|A|U|2051
8VK0|1|A|G|2052
*
8VK0|1|A|C|2129
8VK0|1|A|G|2130
*
8VK0|1|A|C|2148
8VK0|1|A|C|2149
8VK0|1|A|U|2150
8VK0|1|A|A|2151
8VK0|1|A|A|2152
8VK0|1|A|G|2153
8VK0|1|A|G|2154
8VK0|1|A|U|2155
8VK0|1|A|A|2156
8VK0|1|A|G|2157
*
8VK0|1|A|C|2191
8VK0|1|A|G|2192
8VK0|1|A|A|2193
8VK0|1|A|A|2194
8VK0|1|A|U|2195
8VK0|1|A|G|2196

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain C

50S ribosomal protein L2