J4_8VKI_001

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUAAAC*GGGUUG*CUG*UAAG

Length

19 nucleotides

Bulged bases

8VKI|1|A|U|316, 8VKI|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKI|1|A|C|269
8VKI|1|A|U|270
8VKI|1|A|A|271
8VKI|1|A|A|272
8VKI|1|A|A|273
8VKI|1|A|C|274
*
8VKI|1|A|G|312
8VKI|1|A|G|313
8VKI|1|A|G|314
8VKI|1|A|U|315
8VKI|1|A|U|316
8VKI|1|A|G|317
*
8VKI|1|A|C|492
8VKI|1|A|U|493
8VKI|1|A|G|494
*
8VKI|1|A|U|509
8VKI|1|A|A|510
8VKI|1|A|A|511
8VKI|1|A|G|512

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9