J4_8VKW_002

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VKW_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1808

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8VKW|1|A|G|378
8VKW|1|A|G|379
8VKW|1|A|A|380
8VKW|1|A|A|381
8VKW|1|A|A|382
*
8VKW|1|A|U|398
8VKW|1|A|G|399
8VKW|1|A|C|400
8VKW|1|A|C|401
*
8VKW|1|A|G|405
8VKW|1|A|A|406
8VKW|1|A|C|407
*
8VKW|1|A|G|419
8VKW|1|A|G|420
8VKW|1|A|U|421
8VKW|1|A|A|422
8VKW|1|A|C|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain V

50S ribosomal protein L24