J4_8VKW_006
3D structure
- PDB id
- 8VKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- GCAAAAUGC*GA*UGGCACAAACCAGU*AAC
- Length
- 28 nucleotides
- Bulged bases
- 8VKW|1|A|A|1975, 8VKW|1|A|G|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VKW|1|A|G|1892
8VKW|1|A|C|1893
8VKW|1|A|A|1894
8VKW|1|A|A|1895
8VKW|1|A|A|1896
8VKW|1|A|A|1897
8VKW|1|A|U|1898
8VKW|1|A|G|1899
8VKW|1|A|C|1900
*
8VKW|1|A|G|1924
8VKW|1|A|A|1925
*
8VKW|1|A|U|1968
8VKW|1|A|G|1969
8VKW|1|A|G|1970
8VKW|1|A|C|1971
8VKW|1|A|A|1972
8VKW|1|A|C|1973
8VKW|1|A|A|1974
8VKW|1|A|A|1975
8VKW|1|A|A|1976
8VKW|1|A|C|1977
8VKW|1|A|C|1978
8VKW|1|A|A|1979
8VKW|1|A|G|1980
8VKW|1|A|U|1981
*
8VKW|1|A|A|2212
8VKW|1|A|A|2213
8VKW|1|A|C|2214
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
Coloring options: