J4_8VL1_010

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8VL1|1|a|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VL1_010 not in the Motif Atlas

Homologous match to J4_8B0X_008

Geometric discrepancy: 0.0722

The information below is about J4_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8VL1|1|a|G|1310
8VL1|1|a|G|1311
8VL1|1|a|U|1312
8VL1|1|a|U|1313
8VL1|1|a|C|1314
*
8VL1|1|a|G|1338
8VL1|1|a|G|1339
8VL1|1|a|U|1340
8VL1|1|a|G|1341
8VL1|1|a|A|1342
8VL1|1|a|G|1343
*
8VL1|1|a|C|1404
8VL1|1|a|U|1405
*
8VL1|1|a|A|1597
8VL1|1|a|A|1598
8VL1|1|a|U|1599
8VL1|1|a|C|1600
8VL1|1|a|G|1601
8VL1|1|a|U|1602
8VL1|1|a|A|1603
8VL1|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34