J4_8VM8_001
3D structure
- PDB id
- 8VM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of coxsackievirus B3 RNA replication element sD-loop mutant in complex with Fab BL3-6
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.54 Å
Loop
- Sequence
- GC*GG*CG*CC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_00691.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
8VM8|1|R|G|10
8VM8|1|R|C|11
*
8VM8|1|R|G|35
8VM8|1|R|G|36
*
8VM8|1|R|C|46
8VM8|1|R|G|47
*
8VM8|1|R|C|83
8VM8|1|R|C|84
Current chains
- Chain R
- RNA (93-MER)
Nearby chains
No other chains within 10ÅColoring options: