J4_8VOO_003

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VOO|1|D|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|D|G|115
8VOO|1|D|A|116
8VOO|1|D|G|117
8VOO|1|D|U|118
8VOO|1|D|A|119
8VOO|1|D|A|120
8VOO|1|D|U|121
8VOO|1|D|G|122
*
8VOO|1|D|U|239
8VOO|1|D|G|240
*
8VOO|1|D|C|286
8VOO|1|D|U|287
8VOO|1|D|A|288
8VOO|1|D|G|289
*
8VOO|1|D|C|311
8VOO|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17