J4_8VOQ_002
3D structure
- PDB id
- 8VOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8VOQ|1|B|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VOQ|1|B|G|7
8VOQ|1|B|U|8
8VOQ|1|B|G|9
8VOQ|1|B|G|10
*
8VOQ|1|B|C|25
8VOQ|1|B|G|26
8VOQ|1|B|U|27
*
8VOQ|1|B|A|43
8VOQ|1|B|A|44
8VOQ|1|B|G|45
8VOQ|1|B|G|46
8VOQ|1|B|U|47
8VOQ|1|B|C|48
8VOQ|1|B|G|49
*
8VOQ|1|B|C|65
8VOQ|1|B|C|66
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L16
Coloring options: