J4_8VOQ_003

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VOQ|1|D|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|D|G|115
8VOQ|1|D|A|116
8VOQ|1|D|G|117
8VOQ|1|D|U|118
8VOQ|1|D|A|119
8VOQ|1|D|A|120
8VOQ|1|D|U|121
8VOQ|1|D|G|122
*
8VOQ|1|D|U|239
8VOQ|1|D|G|240
*
8VOQ|1|D|C|286
8VOQ|1|D|U|287
8VOQ|1|D|A|288
8VOQ|1|D|G|289
*
8VOQ|1|D|C|311
8VOQ|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17