J4_8VOS_003

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VOS|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|G|115
8VOS|1|D|A|116
8VOS|1|D|G|117
8VOS|1|D|U|118
8VOS|1|D|A|119
8VOS|1|D|A|120
8VOS|1|D|U|121
8VOS|1|D|G|122
*
8VOS|1|D|U|239
8VOS|1|D|G|240
*
8VOS|1|D|C|286
8VOS|1|D|U|287
8VOS|1|D|A|288
8VOS|1|D|G|289
*
8VOS|1|D|C|311
8VOS|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

Small ribosomal subunit protein bS16

Chain V

Small ribosomal subunit protein uS17