J4_8VOS_010

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8VOS|1|a|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|a|G|1310
8VOS|1|a|G|1311
8VOS|1|a|U|1312
8VOS|1|a|U|1313
8VOS|1|a|C|1314
*
8VOS|1|a|G|1338
8VOS|1|a|G|1339
8VOS|1|a|U|1340
8VOS|1|a|G|1341
8VOS|1|a|A|1342
8VOS|1|a|G|1343
*
8VOS|1|a|C|1404
8VOS|1|a|U|1405
*
8VOS|1|a|A|1597
8VOS|1|a|A|1598
8VOS|1|a|U|1599
8VOS|1|a|C|1600
8VOS|1|a|G|1601
8VOS|1|a|U|1602
8VOS|1|a|A|1603
8VOS|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34