J4_8VPK_001

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUAAAC*GGGUUG*CUG*UAAG

Length

19 nucleotides

Bulged bases

8VPK|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|C|269
8VPK|1|A|U|270
8VPK|1|A|A|271
8VPK|1|A|A|272
8VPK|1|A|A|273
8VPK|1|A|C|274
*
8VPK|1|A|G|312
8VPK|1|A|G|313
8VPK|1|A|G|314
8VPK|1|A|U|315
8VPK|1|A|U|316
8VPK|1|A|G|317
*
8VPK|1|A|C|492
8VPK|1|A|U|493
8VPK|1|A|G|494
*
8VPK|1|A|U|509
8VPK|1|A|A|510
8VPK|1|A|A|511
8VPK|1|A|G|512

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9