J4_8VR4_006

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VR4_006 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0754

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VR4|1|A|G|1989
8VR4|1|A|A|1990
8VR4|1|A|C|1991
8VR4|1|A|U|1992
8VR4|1|A|G|1993
*
8VR4|1|A|C|2005
8VR4|1|A|A|2006
8VR4|1|A|C|2007
8VR4|1|A|A|2008
8VR4|1|A|G|2009
*
8VR4|1|A|U|2044
8VR4|1|A|G|2045
8VR4|1|A|A|2046
8VR4|1|A|C|2047
*
8VR4|1|A|G|2199
8VR4|1|A|U|2200
8VR4|1|A|A|2201
8VR4|1|A|A|2202
8VR4|1|A|C|2203

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2