J4_8VR4_007

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8VR4|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VR4_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1622

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8VR4|1|A|C|2050
8VR4|1|A|U|2051
8VR4|1|A|G|2052
*
8VR4|1|A|C|2129
8VR4|1|A|G|2130
*
8VR4|1|A|C|2148
8VR4|1|A|C|2149
8VR4|1|A|U|2150
8VR4|1|A|A|2151
8VR4|1|A|A|2152
8VR4|1|A|G|2153
8VR4|1|A|G|2154
8VR4|1|A|U|2155
8VR4|1|A|A|2156
8VR4|1|A|G|2157
*
8VR4|1|A|C|2191
8VR4|1|A|G|2192
8VR4|1|A|A|2193
8VR4|1|A|A|2194
8VR4|1|A|U|2195
8VR4|1|A|G|2196

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain C

50S ribosomal protein L2