J4_8VRL_001

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAAAC*GGGUUG*CUG*UAAG

Length

19 nucleotides

Bulged bases

8VRL|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|C|269
8VRL|1|A|U|270
8VRL|1|A|A|271
8VRL|1|A|A|272
8VRL|1|A|A|273
8VRL|1|A|C|274
*
8VRL|1|A|G|312
8VRL|1|A|G|313
8VRL|1|A|G|314
8VRL|1|A|U|315
8VRL|1|A|U|316
8VRL|1|A|G|317
*
8VRL|1|A|C|492
8VRL|1|A|U|493
8VRL|1|A|G|494
*
8VRL|1|A|U|509
8VRL|1|A|A|510
8VRL|1|A|A|511
8VRL|1|A|G|512

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9