J4_8VRL_002

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VRL_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1448

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8VRL|1|A|G|378
8VRL|1|A|G|379
8VRL|1|A|A|380
8VRL|1|A|A|381
8VRL|1|A|A|382
*
8VRL|1|A|U|398
8VRL|1|A|G|399
8VRL|1|A|C|400
8VRL|1|A|C|401
*
8VRL|1|A|G|405
8VRL|1|A|A|406
8VRL|1|A|C|407
*
8VRL|1|A|G|419
8VRL|1|A|G|420
8VRL|1|A|U|421
8VRL|1|A|A|422
8VRL|1|A|C|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain V

50S ribosomal protein L24