J4_8VRL_009

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VRL_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.124

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8VRL|1|A|A|2867
8VRL|1|A|A|2868
8VRL|1|A|C|2869
8VRL|1|A|C|2870
*
8VRL|1|A|G|2898
8VRL|1|A|A|2899
8VRL|1|A|C|2900
*
8VRL|1|A|G|2955
8VRL|1|A|G|2956
8VRL|1|A|A|2957
8VRL|1|A|C|2958
8VRL|1|A|A|2959
*
8VRL|1|A|U|2993
8VRL|1|A|C|2994
8VRL|1|A|U|2995

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL13

Chain L

50S ribosomal protein L14