J4_8VSA_005

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VSA_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2209

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8VSA|1|23S|C|601
8VSA|1|23S|A|602
8VSA|1|23S|A|603
8VSA|1|23S|G|604
*
8VSA|1|23S|C|624
8VSA|1|23S|G|625
8VSA|1|23S|A|626
8VSA|1|23S|A|627
8VSA|1|23S|G|628
*
8VSA|1|23S|C|635
8VSA|1|23S|G|636
8VSA|1|23S|A|637
8VSA|1|23S|G|638
*
8VSA|1|23S|C|650
8VSA|1|23S|G|651
8VSA|1|23S|U|652
8VSA|1|23S|U|653
8VSA|1|23S|A|654
8VSA|1|23S|A|655
8VSA|1|23S|G|656

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L15

50S ribosomal protein L15

Chain L35

50S ribosomal protein L35