J4_8VSA_014

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAG*CGCC*GGAGGUCUG*CAU

Length

20 nucleotides

Bulged bases

8VSA|1|ATRN|U|8, 8VSA|1|ATRN|U|47, 8VSA|1|ATRN|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|ATRN|A|7
8VSA|1|ATRN|U|8
8VSA|1|ATRN|A|9
8VSA|1|ATRN|G|10
*
8VSA|1|ATRN|C|25
8VSA|1|ATRN|G|26
8VSA|1|ATRN|C|27
8VSA|1|ATRN|C|28
*
8VSA|1|ATRN|G|42
8VSA|1|ATRN|G|43
8VSA|1|ATRN|A|44
8VSA|1|ATRN|G|45
8VSA|1|ATRN|G|46
8VSA|1|ATRN|U|47
8VSA|1|ATRN|C|48
8VSA|1|ATRN|U|49
8VSA|1|ATRN|G|50
*
8VSA|1|ATRN|C|64
8VSA|1|ATRN|A|65
8VSA|1|ATRN|U|66

Current chains

Chain ATRN

A-tRNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain TMRN

Transfer-messenger RNA; tmRNA