J4_8VTU_002

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTU_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0553

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8VTU|1|1A|C|297
8VTU|1|1A|G|298
8VTU|1|1A|A|299
8VTU|1|1A|A|300
8VTU|1|1A|G|301
*
8VTU|1|1A|C|316
8VTU|1|1A|G|317
8VTU|1|1A|C|318
8VTU|1|1A|C|319
*
8VTU|1|1A|G|323
8VTU|1|1A|A|324
8VTU|1|1A|G|325
*
8VTU|1|1A|C|337
8VTU|1|1A|G|338
8VTU|1|1A|U|339
8VTU|1|1A|A|340
8VTU|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24