J4_8VTV_024

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

8VTV|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTV_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.075

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8VTV|1|2A|U|1833
8VTV|1|2A|U|1834
8VTV|1|2A|G|1835
*
8VTV|1|2A|C|1905
8VTV|1|2A|G|1906
*
8VTV|1|2A|C|1924
8VTV|1|2A|C|1925
8VTV|1|2A|U|1926
8VTV|1|2A|A|1927
8VTV|1|2A|A|1928
8VTV|1|2A|G|1929
8VTV|1|2A|G|1930
8VTV|1|2A|U|1931
8VTV|1|2A|A|1932
8VTV|1|2A|G|1933
*
8VTV|1|2A|C|1967
8VTV|1|2A|G|1968
8VTV|1|2A|A|1969
8VTV|1|2A|A|1970
8VTV|1|2A|A|1971
8VTV|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA