J4_8VTW_003

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

8VTW|1|1A|G|1271, 8VTW|1|1A|A|1272, 8VTW|1|1A|U|1273, 8VTW|1|1A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.4

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8VTW|1|1A|C|1270
8VTW|1|1A|G|1271
8VTW|1|1A|A|1272
8VTW|1|1A|U|1273
8VTW|1|1A|A|1274
8VTW|1|1A|A|1275
8VTW|1|1A|A|1276
*
8VTW|1|1A|U|1294
8VTW|1|1A|C|1295
*
8VTW|1|1A|G|1645
8VTW|1|1A|C|1646
8VTW|1|1A|G|1647
8VTW|1|1A|C|1648
*
8VTW|1|1A|G|2009
8VTW|1|1A|G|2010

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22