J4_8VTY_021

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

8VTY|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTY_021 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0561

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8VTY|1|2A|U|1833
8VTY|1|2A|U|1834
8VTY|1|2A|G|1835
*
8VTY|1|2A|C|1905
8VTY|1|2A|G|1906
*
8VTY|1|2A|C|1924
8VTY|1|2A|C|1925
8VTY|1|2A|U|1926
8VTY|1|2A|A|1927
8VTY|1|2A|A|1928
8VTY|1|2A|G|1929
8VTY|1|2A|G|1930
8VTY|1|2A|U|1931
8VTY|1|2A|A|1932
8VTY|1|2A|G|1933
*
8VTY|1|2A|C|1967
8VTY|1|2A|G|1968
8VTY|1|2A|A|1969
8VTY|1|2A|A|1970
8VTY|1|2A|A|1971
8VTY|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA