3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
8VUP|1|1|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VUP|1|1|C|1833
8VUP|1|1|U|1834
8VUP|1|1|G|1835
*
8VUP|1|1|C|1905
8VUP|1|1|G|1906
*
8VUP|1|1|C|1924
8VUP|1|1|C|1925
8VUP|1|1|U|1926
8VUP|1|1|A|1927
8VUP|1|1|A|1928
8VUP|1|1|G|1929
8VUP|1|1|G|1930
8VUP|1|1|U|1931
8VUP|1|1|A|1932
8VUP|1|1|G|1933
*
8VUP|1|1|C|1967
8VUP|1|1|G|1968
8VUP|1|1|A|1969
8VUP|1|1|A|1970
8VUP|1|1|U|1971
8VUP|1|1|G|1972

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L2

Coloring options:

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