J4_8VUP_009

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GAAG*UGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|1|G|2643
8VUP|1|1|G|2644
8VUP|1|1|G|2645
8VUP|1|1|C|2646
*
8VUP|1|1|G|2674
8VUP|1|1|A|2675
8VUP|1|1|C|2676
*
8VUP|1|1|G|2732
8VUP|1|1|A|2733
8VUP|1|1|A|2734
8VUP|1|1|G|2735
*
8VUP|1|1|U|2769
8VUP|1|1|G|2770
8VUP|1|1|C|2771

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14