J4_8VUP_010

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VUP|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VUP_010 not in the Motif Atlas

Homologous match to J4_8B0X_001

Geometric discrepancy: 0.2519

The information below is about J4_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8VUP|1|2|G|115
8VUP|1|2|A|116
8VUP|1|2|G|117
8VUP|1|2|U|118
8VUP|1|2|A|119
8VUP|1|2|A|120
8VUP|1|2|U|121
8VUP|1|2|G|122
*
8VUP|1|2|U|239
8VUP|1|2|G|240
*
8VUP|1|2|C|286
8VUP|1|2|U|287
8VUP|1|2|A|288
8VUP|1|2|G|289
*
8VUP|1|2|C|311
8VUP|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17