J4_8VUP_011

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUGGAG*CAUAACGU*ACCAAAG*UGCCAUC

Length

29 nucleotides

Bulged bases

8VUP|1|2|C|183, 8VUP|1|2|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|G|138
8VUP|1|2|A|139
8VUP|1|2|U|140
8VUP|1|2|G|141
8VUP|1|2|G|142
8VUP|1|2|A|143
8VUP|1|2|G|144
*
8VUP|1|2|C|178
8VUP|1|2|A|179
8VUP|1|2|U|180
8VUP|1|2|A|181
8VUP|1|2|A|182
8VUP|1|2|C|183
8VUP|1|2|G|184
8VUP|1|2|U|185
*
8VUP|1|2|A|192
8VUP|1|2|C|193
8VUP|1|2|C|194
8VUP|1|2|A|195
8VUP|1|2|A|196
8VUP|1|2|A|197
8VUP|1|2|G|198
*
8VUP|1|2|U|219
8VUP|1|2|G|220
8VUP|1|2|C|221
8VUP|1|2|C|222
8VUP|1|2|A|223
8VUP|1|2|U|224
8VUP|1|2|C|225

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20