J4_8VV4_011

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VV4|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VV4|1|2|G|115
8VV4|1|2|A|116
8VV4|1|2|G|117
8VV4|1|2|U|118
8VV4|1|2|A|119
8VV4|1|2|A|120
8VV4|1|2|U|121
8VV4|1|2|G|122
*
8VV4|1|2|U|239
8VV4|1|2|G|240
*
8VV4|1|2|C|286
8VV4|1|2|U|287
8VV4|1|2|A|288
8VV4|1|2|G|289
*
8VV4|1|2|C|311
8VV4|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

Small ribosomal subunit protein uS17