J4_8VVP_002

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

8VVP|1|TA|U|8, 8VVP|1|TA|U|47, 8VVP|1|TA|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|TA|A|7
8VVP|1|TA|U|8
8VVP|1|TA|A|9
8VVP|1|TA|G|10
*
8VVP|1|TA|C|25
8VVP|1|TA|A|26
8VVP|1|TA|U|27
*
8VVP|1|TA|A|43
8VVP|1|TA|G|44
8VVP|1|TA|G|45
8VVP|1|TA|G|46
8VVP|1|TA|U|47
8VVP|1|TA|C|48
8VVP|1|TA|C|49
*
8VVP|1|TA|G|65
8VVP|1|TA|U|66

Current chains

Chain TA

E-site tRNA

Nearby chains

Chain FB

S5

Chain NA

eL42