J4_8VVP_004
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8VVP|1|WA|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVP_004 not in the Motif Atlas
- Homologous match to J4_8GLP_001
- Geometric discrepancy: 0.0527
- The information below is about J4_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8VVP|1|WA|C|111
8VVP|1|WA|C|112
*
8VVP|1|WA|G|278
8VVP|1|WA|A|279
8VVP|1|WA|G|280
8VVP|1|WA|U|281
8VVP|1|WA|C|282
8VVP|1|WA|G|283
*
8VVP|1|WA|C|304
8VVP|1|WA|A|305
8VVP|1|WA|A|306
8VVP|1|WA|A|307
8VVP|1|WA|G|308
8VVP|1|WA|C|309
8VVP|1|WA|G|310
*
8VVP|1|WA|U|327
8VVP|1|WA|A|328
8VVP|1|WA|A|329
8VVP|1|WA|G|330
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain GA
- L35
- Chain HA
- L36
- Chain K
- L13
- Chain M
- L15
Coloring options: