J4_8VVP_004

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

8VVP|1|WA|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|C|111
8VVP|1|WA|C|112
*
8VVP|1|WA|G|278
8VVP|1|WA|A|279
8VVP|1|WA|G|280
8VVP|1|WA|U|281
8VVP|1|WA|C|282
8VVP|1|WA|G|283
*
8VVP|1|WA|C|304
8VVP|1|WA|A|305
8VVP|1|WA|A|306
8VVP|1|WA|A|307
8VVP|1|WA|G|308
8VVP|1|WA|C|309
8VVP|1|WA|G|310
*
8VVP|1|WA|U|327
8VVP|1|WA|A|328
8VVP|1|WA|A|329
8VVP|1|WA|G|330

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain HA

L36

Chain K

L13

Chain M

L15