J4_8VVP_006

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAG*CGCGCCGG*CACGGGG

Length

24 nucleotides

Bulged bases

8VVP|1|WA|G|964, 8VVP|1|WA|C|978, 8VVP|1|WA|C|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|C|713
8VVP|1|WA|C|714
*
8VVP|1|WA|G|960
8VVP|1|WA|A|961
8VVP|1|WA|G|962
8VVP|1|WA|G|963
8VVP|1|WA|G|964
8VVP|1|WA|A|965
8VVP|1|WA|G|966
*
8VVP|1|WA|C|976
8VVP|1|WA|G|977
8VVP|1|WA|C|978
8VVP|1|WA|G|979
8VVP|1|WA|C|980
8VVP|1|WA|C|981
8VVP|1|WA|G|982
8VVP|1|WA|G|983
*
8VVP|1|WA|C|1280
8VVP|1|WA|A|1281
8VVP|1|WA|C|1282
8VVP|1|WA|G|1283
8VVP|1|WA|G|1284
8VVP|1|WA|G|1285
8VVP|1|WA|G|1286

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain DA

L32

Chain E

L6

Chain F

uL30